Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
V
|
W
A
add() (cwlkernel.cwlrepository.CWLComponent.CWLWorkflow method)
add_input() (cwlkernel.cwlrepository.CWLComponent.CWLWorkflow method)
add_output_source() (cwlkernel.cwlrepository.CWLComponent.CWLWorkflow method)
add_step_in_out() (cwlkernel.cwlrepository.CWLComponent.CWLWorkflow method)
append() (cwlkernel.CWLBuilder.CWLSnippetBuilder method)
append_files() (cwlkernel.IOManager.IOFileManager method)
B
banner (cwlkernel.CWLKernel.CWLKernel attribute)
build() (cwlkernel.CWLBuilder.CWLBuilder method)
(cwlkernel.CWLBuilder.CWLSnippetBuilder method)
C
clear() (cwlkernel.CWLBuilder.CWLSnippetBuilder method)
(cwlkernel.IOManager.IOFileManager method)
collect_infrastructure_metrics() (cwlkernel.CWLLogger.CWLLogger class method)
command_line_tool (cwlkernel.cwlrepository.CWLComponent.CWLTool attribute)
compile_executed_steps_as_workflow() (in module cwlkernel.kernel_magics)
compose_requirements() (cwlkernel.cwlrepository.CWLComponent.CWLTool method)
(cwlkernel.cwlrepository.CWLComponent.CWLWorkflow method)
(cwlkernel.cwlrepository.CWLComponent.WorkflowComponent method)
CoreExecutor (class in cwlkernel.CoreExecutor)
CWLBuilder (class in cwlkernel.CWLBuilder)
CWLExecuteConfigurator (class in cwlkernel.CWLExecuteConfigurator)
CWLKernel (class in cwlkernel.CWLKernel)
cwlkernel.CoreExecutor (module)
cwlkernel.CWLBuilder (module)
cwlkernel.CWLExecuteConfigurator (module)
cwlkernel.CWLKernel (module)
cwlkernel.CWLLogger (module)
cwlkernel.CWLLoggerStorageManager (module)
cwlkernel.cwlrepository.CWLComponent (module)
cwlkernel.cwlrepository.cwlrepository (module)
cwlkernel.IOManager (module)
cwlkernel.kernel_magics (module)
CWLKernel.register_magic (class in cwlkernel.CWLKernel)
CWLKernel.register_magics_suggester (class in cwlkernel.CWLKernel)
CWLLogger (class in cwlkernel.CWLLogger)
CWLLoggerStorageManager (class in cwlkernel.CWLLoggerStorageManager)
CWLSnippetBuilder (class in cwlkernel.CWLBuilder)
CWLTool (class in cwlkernel.cwlrepository.CWLComponent)
CWLWorkflow (class in cwlkernel.cwlrepository.CWLComponent)
D
data() (in module cwlkernel.kernel_magics)
display_data() (in module cwlkernel.kernel_magics)
display_data_csv() (in module cwlkernel.kernel_magics)
display_data_image() (in module cwlkernel.kernel_magics)
do_complete() (cwlkernel.CWLKernel.CWLKernel method)
do_execute() (cwlkernel.CWLKernel.CWLKernel method)
E
edit() (in module cwlkernel.kernel_magics)
execute() (cwlkernel.CoreExecutor.CoreExecutor method)
(cwlkernel.kernel_magics.ExecutionMagics static method)
execute_with_provenance() (cwlkernel.kernel_magics.ExecutionMagics static method)
ExecutionMagics (class in cwlkernel.kernel_magics)
F
files_counter (cwlkernel.IOManager.IOFileManager attribute)
G
get_current_code() (cwlkernel.CWLBuilder.CWLSnippetBuilder method)
get_files() (cwlkernel.IOManager.IOFileManager method)
get_files_registry() (cwlkernel.IOManager.IOFileManager method)
get_files_uri() (cwlkernel.IOManager.IOFileManager method)
get_hostname() (cwlkernel.CWLLogger.CWLLogger class method)
get_input() (cwlkernel.cwlrepository.CWLComponent.WorkflowComponent method)
get_instance() (cwlkernel.cwlrepository.cwlrepository.WorkflowRepository class method)
get_last_result_by_id() (cwlkernel.IOManager.ResultsManager method)
get_output() (cwlkernel.cwlrepository.CWLComponent.WorkflowComponent method)
get_past_results() (cwlkernel.CWLKernel.CWLKernel method)
get_pid() (cwlkernel.CWLKernel.CWLKernel method)
get_running_kernels() (cwlkernel.CWLLogger.CWLLogger class method)
get_storage_path() (cwlkernel.CWLLoggerStorageManager.CWLLoggerStorageManager method)
get_workflow_component() (cwlkernel.cwlrepository.CWLComponent.WorkflowComponentFactory method)
github_import() (in module cwlkernel.kernel_magics)
H
history (cwlkernel.CWLKernel.CWLKernel attribute)
I
id (cwlkernel.cwlrepository.CWLComponent.WorkflowComponent attribute)
implementation (cwlkernel.CWLKernel.CWLKernel attribute)
implementation_version (cwlkernel.CWLKernel.CWLKernel attribute)
inputs (cwlkernel.cwlrepository.CWLComponent.CWLTool attribute)
(cwlkernel.cwlrepository.CWLComponent.CWLWorkflow attribute)
(cwlkernel.cwlrepository.CWLComponent.WorkflowComponent attribute)
IOFileManager (class in cwlkernel.IOManager)
J
JupyterFactory (class in cwlkernel.CoreExecutor)
L
language_info (cwlkernel.CWLKernel.CWLKernel attribute)
language_version (cwlkernel.CWLKernel.CWLKernel attribute)
load() (cwlkernel.CWLLogger.CWLLogger method)
(cwlkernel.CWLLoggerStorageManager.CWLLoggerStorageManager method)
logs() (in module cwlkernel.kernel_magics)
M
magics() (in module cwlkernel.kernel_magics)
MagicSnippetBuilder (class in cwlkernel.kernel_magics)
ManualWorkflowComposer (class in cwlkernel.kernel_magics)
MissingIdError
N
new_workflow() (cwlkernel.kernel_magics.ManualWorkflowComposer static method)
new_workflow_add_input() (cwlkernel.kernel_magics.ManualWorkflowComposer static method)
new_workflow_add_output_source() (cwlkernel.kernel_magics.ManualWorkflowComposer static method)
new_workflow_add_step() (cwlkernel.kernel_magics.ManualWorkflowComposer static method)
new_workflow_add_step_in() (cwlkernel.kernel_magics.ManualWorkflowComposer static method)
new_workflow_build() (cwlkernel.kernel_magics.ManualWorkflowComposer static method)
O
outputs (cwlkernel.cwlrepository.CWLComponent.CWLTool attribute)
(cwlkernel.cwlrepository.CWLComponent.CWLWorkflow attribute)
(cwlkernel.cwlrepository.CWLComponent.WorkflowComponent attribute)
P
parse_args() (cwlkernel.kernel_magics.Scatter class method)
parser (cwlkernel.kernel_magics.Scatter attribute)
properties (cwlkernel.CWLExecuteConfigurator.CWLExecuteConfigurator attribute)
ProvenanceFactory (class in cwlkernel.CoreExecutor)
R
read() (cwlkernel.IOManager.IOFileManager method)
remove() (cwlkernel.cwlrepository.CWLComponent.CWLWorkflow method)
(cwlkernel.IOManager.IOFileManager method)
results_manager (cwlkernel.CWLKernel.CWLKernel attribute)
ResultsManager (class in cwlkernel.IOManager)
runtime_directory (cwlkernel.CWLKernel.CWLKernel attribute)
S
sample_csv() (in module cwlkernel.kernel_magics)
save() (cwlkernel.CWLLogger.CWLLogger method)
(cwlkernel.CWLLoggerStorageManager.CWLLoggerStorageManager method)
Scatter (class in cwlkernel.kernel_magics)
scatter() (cwlkernel.kernel_magics.Scatter static method)
scatter_template (cwlkernel.kernel_magics.Scatter attribute)
send_error_response() (cwlkernel.CWLKernel.CWLKernel method)
send_json_response() (cwlkernel.CWLKernel.CWLKernel method)
send_text_to_stdout() (cwlkernel.CWLKernel.CWLKernel method)
set_data() (cwlkernel.CoreExecutor.CoreExecutor method)
set_workflow_path() (cwlkernel.CoreExecutor.CoreExecutor method)
snippet() (cwlkernel.kernel_magics.MagicSnippetBuilder static method)
steps (cwlkernel.cwlrepository.CWLComponent.CWLWorkflow attribute)
suggest_execution_id() (cwlkernel.kernel_magics.ExecutionMagics static method)
system() (in module cwlkernel.kernel_magics)
T
to_dict() (cwlkernel.CWLLogger.CWLLogger method)
(cwlkernel.cwlrepository.CWLComponent.CWLTool method)
(cwlkernel.cwlrepository.CWLComponent.CWLWorkflow method)
(cwlkernel.cwlrepository.CWLComponent.WorkflowComponent method)
to_yaml() (cwlkernel.cwlrepository.CWLComponent.CWLTool method)
(cwlkernel.cwlrepository.CWLComponent.CWLWorkflow method)
(cwlkernel.cwlrepository.CWLComponent.WorkflowComponent method)
V
validate() (cwlkernel.cwlrepository.CWLComponent.CWLWorkflow method)
validate_input_files() (cwlkernel.CoreExecutor.CoreExecutor class method)
view_tool() (in module cwlkernel.kernel_magics)
visualize_graph() (in module cwlkernel.kernel_magics)
W
workflow_repository (cwlkernel.CWLKernel.CWLKernel attribute)
WorkflowComponent (class in cwlkernel.cwlrepository.CWLComponent)
WorkflowComponentFactory (class in cwlkernel.cwlrepository.CWLComponent)
WorkflowRepository (class in cwlkernel.cwlrepository.cwlrepository)
write() (cwlkernel.IOManager.IOFileManager method)
CWLKernel
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